つらつらと Galaxy 関連の URL を貼るだけのエントリー

Galaxy の説明もしない俺得エントリー (?)

Galaxy とは

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences | Genome Biology | Full Text
の論文を参照☆
http://blog.openhelix.eu/?p=5164
上記論文を引用している OpenHelix Blog のエントリー。

Galaxy web service

http://main.g2.bx.psu.edu/
http://galaxy.fml.mpg.de/
http://hyperbrowser.uio.no/hb/
クローンが各地にあるっぽい。派生版もある?
クローンでのツールが多少異なるのはバージョン違いか個性のどちらかだろうけど、今のところ見分けがつかない。。

http://main.g2.bx.psu.edu

http://main.g2.bx.psu.edu/u/aun1/p/ngs-analysis-service
http://main.g2.bx.psu.edu/screencast
http://main.g2.bx.psu.edu/u/aun1/p/ismb2010-demo
自分もヘテロプラスミーやるかもしれないのでメモ。

Galaxy Developer Conference 2010 Slides

galaxy / galaxy-central / wiki / DevConf2010 — Bitbucket

Deploying Galaxy on the Cloud - Enis Afgan
Integrating and Scaling Analysis Tools - Dan Blankenberg
Building Scalable Galaxy - Nate Coraor
Galaxy data libraries and sample tracking at NGS facilities - Greg Von Kuster
Next-generation sequencing request management system in Galaxy -- Slideshare - Brad Chapman
Building Custom Genome Browsers with Galaxy Trackster - Kanwei Li
Reproducibility & Transparency: Workflows and Pages - Jeremy Goecks
ZFS for NGS data analysis - Davide Cittaro
Do-It-Yourself Bioinformatics with the FMI Galaxy Server - Hans-Rudolf Hotz
Cistrome Project: An Integrative Platform to Analyze ChIP-chip/seq Data - Tao Liu
Transcriptome Analysis with Galaxy - Gunnar Rätsch
DBCLS Galaxy: A Galaxy Service to integrate databases in Japan - Atsuko Yamaguchi
MPI EVA: High-throughput sequencing of ancient and modern DNA samples - Martin Kircher
Enabling Galaxy to access web services (accessing external resources with point and click) - Jessica Kissinger
Galaxy Internationalization (i18n) and Localization (L10n) - Mitsuteru Nakao
Mercurial for Galaxy Admins - Ry4an Brase
Composite Datatypes in Galaxy - Ross Lazarus
Useful and Usable - Assaf Gordon

メーリングリスト

galaxy-dev Info Page

Galaxy 本体サイト bitbucket.org

3つのブランチに分かれた構成になっている。
galaxy / galaxy-central / wiki / Home — Bitbucket

Main development repository for Galaxy. Active development happens here, and this repository is thus intended for those working on Galaxy development. See http://bitbucket.org/galaxy/galaxy-dist/ for a more stable repository intended for end-users.

galaxy / galaxy-dist — Bitbucket

epository containing latest version of galaxy that is intended for end user use. Normally this has passed functional tests on multiple platforms and is the version running on http://main.g2.bx.psu.edu.

galaxy / cloudman — Bitbucket